|Name:||Automating gene data download|
This scripts assists in downloading bulk genome information by looping through all the chromosomes for a particular file type. It takes a single parameter specifying the datatype to acquire, which must be one of cal, con, int, baf, l2r, imp or hap. The Application specific authentication file ".ukbkey" must also be present in the current directory.
- "gene_multi.sh cal" will download all genotype calls information,
- "gene_multi.sh hap" will download all haplotype information,
This resource be downloaded or viewed using the link: gene_multi.txt
If you have wget available (typically on linux systems), then you can also obtain a copy using the command
wget -nd biobank.ctsu.ox.ac.uk/showcase/showcase/misc/gene_multi.txt