Resource 837

Name:

Exome pVCF file blocks in OQFE pipeline

For ease of handling the pVCF formatted information for the exome genetics was split across a number of files. This document itemises the content of these files. Data is tab-separated integers with 5 columns as follows:

1. Index
2. Chromosome
3. Block
4. First position
5. Last position

Thus, to see the value at position 50100100 in chromosome 2, the relevant line is

 112 2 14 47067337 53790858 

which indicates that researchers must fetch the pVCF file for block 14 within chromosome 2.

This resource can be downloaded or viewed using the link: pvcf_blocks.txt

If you have wget available (typically on linux systems), then you can also obtain a copy using the command

 wget  -nd  biobank.ctsu.ox.ac.uk/ukb/ukb/auxdata/pvcf_blocks.txt