| Title: | Integrating Mouse and Human Genetic Data to Move beyond GWAS and Identify Causal Genes in Cholesterol Metabolism |
| Journal: | Cell Metabolism |
| Published: | 19 Mar 2020 |
| Pubmed: | https://pubmed.ncbi.nlm.nih.gov/32197071/ |
| DOI: | https://doi.org/10.1016/j.cmet.2020.02.015 |
| URL: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7184639 |
| Citations: | 35 (13 in last 2 years) as of 8 Aug 2024 |
Publication 7504
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Abstract
Identifying the causal gene(s) that connects genetic variation to a phenotype is a challenging problem in genome-wide association studies (GWASs). Here, we develop a systematic approach that integrates mouse liver co-expression networks with human lipid GWAS data to identify regulators of cholesterol and lipid metabolism. Through our approach, we identified 48 genes showing replication in mice and associated with plasma lipid traits in humans and six genes on the X chromosome. Among these 54 genes, 25 have no previously identified role in lipid metabolism. Based on functional studies and integration with additional human lipid GWAS datasets, we pinpoint Sestrin1 as a causal gene associated with plasma cholesterol levels in humans. Our validation studies demonstrate that Sestrin1 influences plasma cholesterol in multiple mouse models and regulates cholesterol biosynthesis. Our results highlight the power of combining mouse and human datasets for prioritization of human lipid GWAS loci and discovery of lipid genes.</p>
7 Keywords
- Animals
- Cholesterol
- Databases, Genetic
- Genome-Wide Association Study
- Heat-Shock Proteins
- Humans
- Mice
19 Authors
- Zhonggang Li
- James A Votava
- Gregory J M Zajac
- Jenny N Nguyen
- Fernanda B Leyva Jaimes
- Sophia M Ly
- Jacqueline A Brinkman
- Marco De Giorgi
- Sushma Kaul
- Cara L Green
- Samantha L St Clair
- Sabrina L Belisle
- Julia M Rios
- David W Nelson
- Mary G Sorci-Thomas
- William R Lagor
- Dudley W Lamming
- Chi-Liang Eric Yen
- Brian W Parks
1 Application
| Application ID | Title |
|---|---|
| 24460 | Genetic causes of complex human traits: emphasis on psychiatric, ocular, dermatological, and cardiovascular diseases. |
Enabling scientific discoveries that improve human health