| Application: | 20272, GWAS of kidney function related traits and kidney disease |
| Title: | A catalog of genetic loci associated with kidney function from analyses of a million individuals |
| Size: | 907 B |
| Archived: | 5 Jan 2021 |
| Stability: | Complete |
| Personal: | No individual-level data |
Return 3101
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Notes
Chronic kidney disease (CKD) is responsible for a public health burden with multi-systemic complications. Through trans-ancestry meta-analysis of genome-wide association studies of estimated glomerular filtration rate (eGFR) and independent replication (n?=?1,046,070), we identified 264 associated loci (166 new). Of these, 147 were likely to be relevant for kidney function on the basis of associations with the alternative kidney function marker blood urea nitrogen (n?=?416,178). Pathway and enrichment analyses, including mouse models with renal phenotypes, support the kidney as the main target organ. A genetic risk score for lower eGFR was associated with clinically diagnosed CKD in 452,264 independent individuals. Colocalization analyses of associations with eGFR among 783,978 European-ancestry individuals and gene expression across 46 human tissues, including tubulo-interstitial and glomerular kidney compartments, identified 17 genes differentially expressed in kidney. Fine-mapping highlighted missense driver variants in 11 genes and kidney-specific regulatory variants. These results provide a comprehensive priority list of molecular targets for translational research.Application 20272
GWAS of kidney function related traits and kidney disease
Chronic kidney disease (CKD) is a major health issue associated with cardiovascular outcomes. To expand the knowledge of its biological basis, large-scale meta-analyses of genome-wide association studies (GWAS) of renal function have already been conducted, but much unexplained heritability remains. The aim of the proposed research is to carry out GWAS of kidney function related traits and kidney disease, and to characterize known genetic risk loci in a large sample size for context-specific effects. We aim to analyze the UKBB data by itself and meta-analyze it with data from other cohorts and the CKDGen Consortium. CKD is a major health issue affecting >10% of adults in many countries worldwide. By finding genetic susceptibility loci we will increase our knowledge of biological and functional pathways underlying impaired kidney function. This knowledge will eventually support the improvement of the prevention, diagnosis and treatment of kidney diseases. We will check genetic markers across the whole human genome for association with kidney function measures estimated based on serum creatinine and urinary albumin-to-creatinine ratio, kidney disease, and decline of renal function over time. By revealing associated genetic loci and genes, we will obtain insight into the biological functions that may cause kidney diseases. This knowledge will eventually help to improve the prevention of the disease, and the design and development of drugs for the condition. Full cohort with available genetic data (imputed Axiom Genotyping Array data)
| Lead investigator: | Dr Alexander Teumer |
| Lead institution: | University Medicine Greifswald |
2 related Returns
| Return ID | App ID | Description | Archive Date |
|---|---|---|---|
| 3097 | 20272 | Genome-wide association meta-analyses and fine-mapping elucidate pathways influencing albuminuria | 4 Jan 2021 |
| 3098 | 20272 | Target genes, variants, tissues and transcriptional pathways influencing human serum urate levels | 4 Jan 2021 |
1 Publication
| Pub ID | Title | Author(s) | Year | Journal |
|---|---|---|---|---|
| 3102 | A catalog of genetic loci associated with kidney function from analyses of a million individuals | Matthias Wuttke (+326) | 2019 | Nature Genetics |
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