UKB : Category 180

Category 180
Whole genome sequences - Genomics

Description

Whole genome sequence results.

It is anticipated that the first tranche of UK Biobank's whole genome sequence study will become available to researchers towards the end of 2021.

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1 Sub-Category

Category ID	Description	Items
183	WGS pilot studies

17 Data-Fields

Field ID	Description
23196	Whole genome GATK joint call pVCF
23195	Whole genome GraphTyper joint call pVCF
23191	Whole genome variant call files (VCFs)	‡
23192	Whole genome variant calls indices	‡
23193	Whole genome CRAM files	‡
23194	Whole genome CRAM indices	‡
23350	Manta-called scored structural variant and indel candidates	‡
23351	Manta-called unscored structural variant and indel candidates	‡
23197	BQSR - GATK BaseRecalibrator
23347	Concatenated QC Metrics
23346	Genotype Concordance
23199	Genotype Concordance - Contingency Metrics
23319	Genotype Concordance - Detail Metrics
23345	Genotype Concordance - Summary Metrics (Picard)
23198	Sample Contamination (ReadHaps)
23348	Sample Contamination (verifyBamID) - depthSM
23349	Sample Contamination (verifyBamID) - selfSM

6 fields marked ‡ are blob/bulk.

1 Parent Category

Category ID	Description	Items
100314	Genomics	+115

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