|Pre-processed version of genomic reference used in Whole Exome Sequencing by SPB pipeline
The SPB pipeline maps raw reads to a 'flat' version of the GRCh38 reference genome that does not include alternative contigs.
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It can be downloaded or viewed using the link: h38flat.fasta-index.tar.gz
If you have wget available (typically on linux systems), then you can also obtain a copy using the command
wget -nd biobank.ctsu.ox.ac.uk/ukb/ukb/auxdata/h38flat.fasta-index.tar.gz